PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000769.1_g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ZF-HD
Protein Properties Length: 163aa    MW: 18125.3 Da    PI: 8.3849
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000769.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer85.75e-27554358
              ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                             +  YkeCl+NhAaslG++a+DGCgEf+p+       aal+CaACgCHRnFHR+ v+
  Itr_sc000769.1_g00011.1  5 NELYKECLRNHAASLGSYATDGCGEFTPD------GAALHCAACGCHRNFHRKVVA 54
                             568*************************8......589***************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.2E-23752IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.3E-23851IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.039852IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-9851IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.8E-2979147IPR009057Homeodomain-like
SuperFamilySSF466897.31E-1781145IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-2987145IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MDNTNELYKE CLRNHAASLG SYATDGCGEF TPDGAALHCA ACGCHRNFHR KVVAYGRGAA  60
AVEDHDMMGT PTPPAPEMTE SPERSGKKRF RTKFTAEQKE KMLAFAEKLG WKLQRKDEED  120
EIERFCRGVG VSRKVFKVWM HNHKNNNSST PSASTGNVSS LTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-22881501879ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073164.11e-75PREDICTED: zinc-finger homeodomain protein 10-like
SwissprotQ9SB613e-43ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLB9I4V44e-75B9I4V4_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0012s03770.11e-74(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118652023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-34homeobox protein 22